Super Enhancer Details

General details

Super-Enhancer ID:	mSE_10643
Genomic locus:	chr11:95974981-95993177
Size/Length:	18196 bp
Genome:	Mouse - mm9
Cell/Tissue:	Embryonic stem cells
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM723020
Reference:	Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID:	NM_001271018
Gene Symbol:	Calcoco2
Chromosome:	chr11
TSS:	95960229 (Transcription start site)
TES:	95973276 (Transcription end site)
Strand:	-
Number of Exons:	6
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window.

FASTA sequence

>chr11:95974981-95993177
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10643

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
CM034069	mSE_10643	chr11	95974981	95976691	1710	574.06
CM034070	mSE_10643	chr11	95977350	95977687	337	107.58
CM034071	mSE_10643	chr11	95987029	95988198	1169	460.7
CM034072	mSE_10643	chr11	95988964	95989502	538	104.22
CM034073	mSE_10643	chr11	95989547	95993177	3630	1691.07