Super Enhancer Details

General details

Super-Enhancer ID:	mSE_10645
Genomic locus:	chr16:20359499-20375610
Size/Length:	16111 bp
Genome:	Mouse - mm9
Cell/Tissue:	Embryonic stem cells
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM723020
Reference:	Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID:	NM_183158
Gene Symbol:	Cyp2ab1
Chromosome:	chr16
TSS:	20308459 (Transcription start site)
TES:	20325477 (Transcription end site)
Strand:	-
Number of Exons:	9
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window.

FASTA sequence

>chr16:20359499-20375610
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10645

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
CM034889	mSE_10645	chr16	20359499	20361355	1856	562.59
CM034890	mSE_10645	chr16	20361803	20363154	1351	614.49
CM034891	mSE_10645	chr16	20369832	20372535	2703	1067.66
CM034892	mSE_10645	chr16	20372598	20373552	954	339.05
CM034893	mSE_10645	chr16	20373610	20374097	487	128.95
CM034894	mSE_10645	chr16	20374147	20375610	1463	588.59