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Super Enhancer Details

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General details

Super-Enhancer ID: mSE_10657
Genomic locus: chr15:76885137-76912478
Size/Length: 27341 bp
Genome: Mouse - mm9
Cell/Tissue: Embryonic stem cells
Factor(s) Used: H3K27ac - (Used to define enhancers)
H3K27ac - (Used to rank SEs)
Input/WCE: GSM723020
Reference: Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID: NM_013593
Gene Symbol: Mb
Chromosome: chr15
TSS: 76845916 (Transcription start site)
TES: 76881098 (Transcription end site)
Strand: -
Number of Exons: 4
External Links:

Software and parameters used

Read Mapping: Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling: MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
Stitching Distance: 12.5 kb
TSS Exclusive Zone: +/- 2 kb
Enhancer-gene Assignment: Genes were assigned to SEs within a 50 kb window.

FASTA sequence



>chr15:76885137-76912478
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10657

Constituent ID SE ID Chrom Start End Constituent Size MACS score
CM034721 mSE_10657 chr15 76885137 76889633 4496 708.4
CM034722 mSE_10657 chr15 76889887 76891121 1234 125.64
CM034723 mSE_10657 chr15 76901000 76902366 1366 116.82
CM034724 mSE_10657 chr15 76908159 76909462 1303 337.55
CM034725 mSE_10657 chr15 76909651 76910992 1341 703.9
CM034726 mSE_10657 chr15 76911017 76912478 1461 202.9