Super Enhancer Details

General details

Super-Enhancer ID:	mSE_10662
Genomic locus:	chr16:17242475-17254782
Size/Length:	12307 bp
Genome:	Mouse - mm9
Cell/Tissue:	Embryonic stem cells
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM723020
Reference:	Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID:	NM_178922
Gene Symbol:	Hic2
Chromosome:	chr16
TSS:	17233679 (Transcription start site)
TES:	17263523 (Transcription end site)
Strand:	+
Number of Exons:	3
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window.

FASTA sequence

>chr16:17242475-17254782
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10662

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
CM034884	mSE_10662	chr16	17242475	17244421	1946	566.06
CM034885	mSE_10662	chr16	17244474	17246897	2423	936
CM034886	mSE_10662	chr16	17247335	17248276	941	166.75
CM034887	mSE_10662	chr16	17248301	17250306	2005	257.33
CM034888	mSE_10662	chr16	17251390	17254782	3392	991.04