Super Enhancer Details

General details

Super-Enhancer ID:	mSE_10664
Genomic locus:	chr12:74185600-74195991
Size/Length:	10391 bp
Genome:	Mouse -
Cell/Tissue:	Embryonic stem cells
Factor(s) Used:	- (Used to define enhancers) - (Used to rank SEs)
Input/WCE:	GSM723020
Reference:	Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID:	NM_011382
Gene Symbol:	Six4
Chromosome:	chr14
TSS:	61176255 (Transcription start site)
TES:	61190852 (Transcription end site)
Strand:	-
Number of Exons:	3
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window.

FASTA sequence

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Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10664

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
CM034305	mSE_10664	chr12	74185600	74186919	1319	609.72
CM034306	mSE_10664	chr12	74186934	74190255	3321	2025.41
CM034307	mSE_10664	chr12	74190670	74191319	649	266.43
CM034308	mSE_10664	chr12	74191327	74192789	1462	656.02
CM034309	mSE_10664	chr12	74193009	74193592	583	174.85
CM034310	mSE_10664	chr12	74195003	74195991	988	235.12