Super Enhancer Details

General details

Super-Enhancer ID:	mSE_10666
Genomic locus:	chr5:136365806-136393422
Size/Length:	27616 bp
Genome:	Mouse -
Cell/Tissue:	Embryonic stem cells
Factor(s) Used:	- (Used to define enhancers) - (Used to rank SEs)
Input/WCE:	GSM723020
Reference:	Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID:	NM_013560
Gene Symbol:	Hspb1
Chromosome:	chr7
TSS:	75931874 (Transcription start site)
TES:	75933614 (Transcription end site)
Strand:	+
Number of Exons:	3
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window.

FASTA sequence

>:-

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10666

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
CM036533	mSE_10666	chr5	136365806	136367619	1813	757.62
CM036534	mSE_10666	chr5	136368186	136369719	1533	457.67
CM036535	mSE_10666	chr5	136378849	136380813	1964	320.41
CM036536	mSE_10666	chr5	136391326	136393422	2096	348.99