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Super Enhancer Details

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General details

Super-Enhancer ID: mSE_10670
Genomic locus: chr7:50581690-50604142
Size/Length: 22452 bp
Genome: Mouse - mm9
Cell/Tissue: Embryonic stem cells
Factor(s) Used: H3K27ac - (Used to define enhancers)
H3K27ac - (Used to rank SEs)
Input/WCE: GSM723020
Reference: Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID:
Gene Symbol: Siglec5
Chromosome:
TSS: (Transcription start site)
TES: (Transcription end site)
Strand:
Number of Exons:
External Links:

Software and parameters used

Read Mapping: Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling: MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
Stitching Distance: 12.5 kb
TSS Exclusive Zone: +/- 2 kb
Enhancer-gene Assignment: Genes were assigned to SEs within a 50 kb window.

FASTA sequence



>chr7:50581690-50604142
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10670

Constituent ID SE ID Chrom Start End Constituent Size MACS score
CM036888 mSE_10670 chr7 50581690 50582526 836 120.29
CM036889 mSE_10670 chr7 50589158 50589799 641 91.29
CM036890 mSE_10670 chr7 50589806 50590355 549 114.18
CM036891 mSE_10670 chr7 50590462 50592295 1833 451.64
CM036892 mSE_10670 chr7 50598202 50603359 5157 2435.01
CM036893 mSE_10670 chr7 50603505 50604142 637 100.68