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Super Enhancer Details

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General details

Super-Enhancer ID: mSE_10671
Genomic locus: chr16:94001067-94016562
Size/Length: 15495 bp
Genome: Mouse - mm9
Cell/Tissue: Embryonic stem cells
Factor(s) Used: H3K27ac - (Used to define enhancers)
H3K27ac - (Used to rank SEs)
Input/WCE: GSM723020
Reference: Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID: NM_001165926
Gene Symbol: Cldn14
Chromosome: chr16
TSS: 93919275 (Transcription start site)
TES: 93930062 (Transcription end site)
Strand: -
Number of Exons: 2
External Links:

Software and parameters used

Read Mapping: Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling: MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
Stitching Distance: 12.5 kb
TSS Exclusive Zone: +/- 2 kb
Enhancer-gene Assignment: Genes were assigned to SEs within a 50 kb window.

FASTA sequence



>chr16:94001067-94016562
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10671

Constituent ID SE ID Chrom Start End Constituent Size MACS score
CM034986 mSE_10671 chr16 94001067 94002586 1519 353.81
CM034987 mSE_10671 chr16 94003051 94003540 489 233.77
CM034988 mSE_10671 chr16 94005764 94008444 2680 393.14
CM034989 mSE_10671 chr16 94010452 94011781 1329 787.7
CM034990 mSE_10671 chr16 94013543 94014151 608 255.56
CM034991 mSE_10671 chr16 94014192 94015706 1514 1239.95
CM034992 mSE_10671 chr16 94015770 94016562 792 167.79