Super Enhancer Details

General details

Super-Enhancer ID:	mSE_10673
Genomic locus:	chr5:117795827-117815461
Size/Length:	19634 bp
Genome:	Mouse - mm9
Cell/Tissue:	Embryonic stem cells
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM723020
Reference:	Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID:	NM_021539
Gene Symbol:	Wsb2
Chromosome:	chr5
TSS:	117807313 (Transcription start site)
TES:	117828598 (Transcription end site)
Strand:	+
Number of Exons:	9
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window.

FASTA sequence

>chr5:117795827-117815461
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10673

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
CM036460	mSE_10673	chr5	117795827	117797409	1582	153.73
CM036461	mSE_10673	chr5	117805930	117807101	1171	445.92
CM036462	mSE_10673	chr5	117807341	117808631	1290	212.92
CM036463	mSE_10673	chr5	117809336	117811832	2496	1922.13
CM036464	mSE_10673	chr5	117812504	117815461	2957	932.09