Super Enhancer Details

General details

Super-Enhancer ID:	mSE_10675
Genomic locus:	chr19:9043097-9073204
Size/Length:	30107 bp
Genome:	Mouse - mm9
Cell/Tissue:	Embryonic stem cells
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM723020
Reference:	Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID:	NM_009643
Gene Symbol:	Ahnak
Chromosome:	chr19
TSS:	9063773 (Transcription start site)
TES:	9093686 (Transcription end site)
Strand:	+
Number of Exons:	5
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window.

FASTA sequence

>chr19:9043097-9073204
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10675

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
CM035369	mSE_10675	chr19	9043097	9044117	1020	139.04
CM035370	mSE_10675	chr19	9045043	9045798	755	133.28
CM035371	mSE_10675	chr19	9054519	9055957	1438	207
CM035372	mSE_10675	chr19	9056790	9058059	1269	137.25
CM035373	mSE_10675	chr19	9062829	9064508	1679	116.25
CM035374	mSE_10675	chr19	9064700	9068064	3364	306.54
CM035375	mSE_10675	chr19	9071669	9073204	1535	346.79