Super Enhancer Details

General details

Super-Enhancer ID:	mSE_10678
Genomic locus:	chr5:113752145-113775757
Size/Length:	23612 bp
Genome:	Mouse - mm9
Cell/Tissue:	Embryonic stem cells
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM723020
Reference:	Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID:
Gene Symbol:	Mir469
Chromosome:
TSS:	(Transcription start site)
TES:	(Transcription end site)
Strand:
Number of Exons:
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window.

FASTA sequence

>chr5:113752145-113775757
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10678

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
CM036423	mSE_10678	chr5	113752145	113754467	2322	540.21
CM036424	mSE_10678	chr5	113757841	113761094	3253	1141.85
CM036425	mSE_10678	chr5	113761422	113762451	1029	98.02
CM036426	mSE_10678	chr5	113762806	113764664	1858	132.39
CM036427	mSE_10678	chr5	113773699	113775757	2058	435.63