Super Enhancer Details

General details

Super-Enhancer ID:	mSE_10680
Genomic locus:	chr10:75398546-75413898
Size/Length:	15352 bp
Genome:	Mouse -
Cell/Tissue:	Embryonic stem cells
Factor(s) Used:	- (Used to define enhancers) - (Used to rank SEs)
Input/WCE:	GSM723020
Reference:	Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID:	NM_009514
Gene Symbol:	Vpreb3
Chromosome:	chr22
TSS:	24094929 (Transcription start site)
TES:	24096630 (Transcription end site)
Strand:	-
Number of Exons:	2
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window.

FASTA sequence

>:-

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10680

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
CM033679	mSE_10680	chr10	75398546	75400910	2364	1339.03
CM033680	mSE_10680	chr10	75400924	75401654	730	634.99
CM033681	mSE_10680	chr10	75401783	75404069	2286	1041.73
CM033682	mSE_10680	chr10	75404104	75404663	559	274.53
CM033683	mSE_10680	chr10	75412549	75413898	1349	99.53