Super Enhancer Details

General details

Super-Enhancer ID:	mSE_10690
Genomic locus:	chr2:71631849-71653774
Size/Length:	21925 bp
Genome:	Mouse - mm9
Cell/Tissue:	Embryonic stem cells
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM723020
Reference:	Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID:	NM_008397
Gene Symbol:	Itga6
Chromosome:	chr2
TSS:	71624995 (Transcription start site)
TES:	71696484 (Transcription end site)
Strand:	+
Number of Exons:	26
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window.

FASTA sequence

>chr2:71631849-71653774
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10690

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
CM035570	mSE_10690	chr2	71631849	71632684	835	90.71
CM035571	mSE_10690	chr2	71638391	71640407	2016	544.79
CM035572	mSE_10690	chr2	71642356	71645060	2704	1200.77
CM035573	mSE_10690	chr2	71649725	71650708	983	148.1
CM035574	mSE_10690	chr2	71651430	71653774	2344	457.88